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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
479
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
479
DNA binding
193
Transcription
24
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
292
transcription factor
107
control
82
recombinant protein
77
histone modification
76
histone
52
RNA binding protein
49
narrow histone mark
27
broad histone mark
18
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
54
August, 2017
50
November, 2018
48
December, 2017
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
666
bam
608
bigWig
450
fastq
427
bed narrowPeak
344
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
713
Homo sapiens
Biosample type
358
tissue
343
cell line
in vitro differentiated cells
12
primary cell
Organ
922
pancreas
713
liver
578
connective tissue
487
adipose tissue
478
epithelium
362
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
24
spleen
20
lung
18
vein
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
713
AMP
Genome assembly (visualization)
548
hg19
468
GRCh38
Lab
642
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
bed broadPeak
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
713 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
320
14
1
1
2
2
2
1
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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