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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
Assay category
336
DNA binding
Target of assay
273
histone
273
histone modification
152
narrow histone mark
121
broad histone mark
58
control
5
transcription factor
Date released
84
May, 2021
67
November, 2017
60
August, 2017
50
May, 2020
49
October, 2019
14
October, 2017
8
February, 2021
4
August, 2021
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
329
Homo sapiens
Biosample type
238
tissue
89
primary cell
in vitro differentiated cells
9
cell line
Organ
118
brain
75
liver
16
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
252
AMP
84
T1D
Genome assembly (visualization)
208
GRCh38
199
hg19
Lab
252
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
336 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
hepatocyte
4
skeletal muscle myoblast
1
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
See all biosamples
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