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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
875
histone modification
874
histone
445
narrow histone mark
429
broad histone mark
416
transcription factor
306
control
94
RNA binding protein
89
recombinant protein
28
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
11
November, 2017
7
November, 2018
6
January, 2019
2
December, 2017
2
December, 2018
Available data
33
bam
33
bed narrowPeak
33
bigBed narrowPeak
33
bigWig
33
fastq
5
bed broadPeak
bigBed broadPeak
Organism
28
Homo sapiens
Biosample type
26
cell line
in vitro differentiated cells
2
tissue
Organ
18
liver
10
blood
10
bodily fluid
Project
28
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
10
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
biosample_type!
in vitro differentiated cells
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
16
GM12878
10
tissue
liver
2
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