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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
15
DNA binding
11
DNA accessibility
9
Transcription
2
3D chromatin structure
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
2
control
Date released
19
April, 2020
17
October, 2019
2
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
37
Homo sapiens
Biosample type
20
tissue
18
primary cell
Organ
936
pancreas
713
liver
579
connective tissue
488
adipose tissue
478
epithelium
362
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
24
spleen
20
lung
18
vein
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
19
LungMap
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
19
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
files.file_type!
bigBed broadPeak
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
lung
10
9
1
primary cell
endothelial cell of umbilical vein
15
2
1
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