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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
DNA binding
49
DNA accessibility
1
3D chromatin structure
Target of assay
3
control
Date released
65
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
40
September, 2018
18
July, 2019
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
October, 2019
3
August, 2017
3
August, 2018
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
318
bam
312
bigWig
252
tsv
152
fastq
66
bed narrowPeak
49
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
bigBed broadPeak
1
bed bed3
1
hic
Organism
302
Homo sapiens
Biosample type
1093
tissue
302
primary cell
144
in vitro differentiated cells
117
cell line
Organ
143
epithelium
134
pancreas
17
connective tissue
6
kidney
6
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
195
AMP
96
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
360
hg19
302
GRCh38
Lab
195
AMP-T2D consortium
96
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
13
inconsistent ontology term
files.file_type!
bigBed broadPeak
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
302 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
Hi-C
primary cell
monocyte
53
13
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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