Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
184
DNA binding
49
DNA accessibility
1
3D chromatin structure
Target of assay
179
histone
179
histone modification
90
broad histone mark
89
narrow histone mark
5
RNA binding protein
5
transcription factor
3
control
Date released
149
May, 2021
72
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
25
August, 2017
23
June, 2019
20
October, 2019
18
July, 2019
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
520
bam
514
bigWig
256
bed narrowPeak
252
tsv
224
fastq
104
bigBed narrowPeak
98
tagAlign
45
bed broadPeak
bigBed broadPeak
30
bed bed3+
1
bed bed3
1
hic
Organism
486
Homo sapiens
Biosample type
1677
tissue
486
primary cell
408
cell line
247
in vitro differentiated cells
1
stem cell
Organ
201
epithelium
188
pancreas
26
connective tissue
18
kidney
12
blood vessel
12
vasculature
10
musculature of body
10
vein
9
liver
7
heart
3
brain
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
295
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
581
hg19
486
GRCh38
Lab
295
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
33
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
486 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
5
10
12
13
pancreatic beta cell
5
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
+ See 66 more…
See all biosamples
Download