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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
233
ChIP-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
Hi-C
8
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
248
DNA accessibility
233
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
204
histone
204
histone modification
106
broad histone mark
98
narrow histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
45
August, 2017
43
April, 2018
42
July, 2018
29
July, 2019
28
October, 2019
9
June, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
November, 2017
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
575
bigWig
564
bam
402
fastq
270
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
988
Homo sapiens
Biosample type
2471
tissue
988
primary cell
511
cell line
278
in vitro differentiated cells
9
stem cell
Organ
375
epithelium
341
pancreas
25
vasculature
23
blood vessel
21
connective tissue
19
kidney
18
vein
11
liver
10
brain
8
blood
8
bodily fluid
5
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
464
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
547
hg19
458
GRCh38
Lab
429
AMP-T2D consortium
324
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
988 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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