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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
93
single cell RNA-seq
6
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
241
Transcription
6
DNA accessibility
6
DNA methylation
Target of assay
3
control
Date released
52
May, 2021
43
April, 2018
42
July, 2018
41
May, 2020
26
September, 2018
18
July, 2019
7
February, 2021
6
February, 2023
5
December, 2019
4
November, 2020
3
August, 2018
2
June, 2018
2
October, 2018
2
October, 2019
Available data
575
bigWig
564
bam
402
fastq
270
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
253
Homo sapiens
Biosample type
1073
tissue
253
primary cell
80
cell line
41
in vitro differentiated cells
3
stem cell
Organ
115
epithelium
103
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
155
AMP
92
T1D
6
HPAP
Genome assembly (visualization)
241
GRCh38
241
hg19
Lab
155
AMP-T2D consortium
92
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
files.file_type!
bigBed broadPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
253 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
11
pancreatic ductal cell
4
10
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