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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
155
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
259
Transcription
258
DNA binding
163
DNA accessibility
11
DNA methylation
7
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
73
September, 2018
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
12
February, 2023
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
609
bam
603
bigWig
295
bed narrowPeak
264
tsv
240
fastq
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
715
Homo sapiens
Biosample type
2561
tissue
715
primary cell
603
cell line
393
in vitro differentiated cells
10
stem cell
Organ
232
epithelium
194
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
510
AMP
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
583
hg19
481
GRCh38
Lab
475
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
award.project!
HPAP
BIOSAMPLE
ASSAY
715 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
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