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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1052
total RNA-seq
779
ChIP-seq
207
ATAC-seq
100
single cell RNA-seq
18
small RNA-seq
16
WGBS
1
DNase-seq
1
Hi-C
Assay category
1170
Transcription
779
DNA binding
208
DNA accessibility
16
DNA methylation
1
3D chromatin structure
Target of assay
678
histone modification
677
histone
345
narrow histone mark
332
broad histone mark
98
transcription factor
32
RNA binding protein
6
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
454
February, 2021
207
May, 2020
188
August, 2017
187
May, 2021
177
October, 2019
164
July, 2018
96
May, 2019
79
July, 2019
72
September, 2018
67
August, 2021
64
April, 2019
57
November, 2017
49
April, 2018
47
October, 2018
40
May, 2024
39
November, 2019
36
December, 2017
35
February, 2023
23
June, 2019
14
October, 2017
13
November, 2018
12
May, 2023
9
March, 2020
7
August, 2020
7
September, 2017
6
January, 2019
5
December, 2019
5
November, 2020
3
August, 2018
3
December, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
2231
bigWig
2228
bam
1169
tsv
1144
bed narrowPeak
660
bigBed narrowPeak
509
fastq
236
bed broadPeak
234
bed bed3+
bigBed broadPeak
214
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
2168
Homo sapiens
Biosample type
1683
tissue
491
primary cell
419
cell line
264
in vitro differentiated cells
3
stem cell
Organ
572
pancreas
504
connective tissue
422
adipose tissue
244
liver
205
epithelium
179
brain
171
heart
115
kidney
112
blood vessel
112
vasculature
66
bone element
60
artery
60
limb
29
nerve
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
1981
AMP
182
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
2181
hg19
2174
GRCh38
Lab
1865
AMP-T2D consortium
180
Kyle Gaulton, UCSD
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
36
inconsistent ontology term
27
inconsistent control
Audit category:
69
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
2174 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
DNase-seq
Hi-C
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
22
1
liver
147
75
1
kidney
20
75
bone tissue
58
+ See 123 more…
primary cell
monocyte
53
84
13
pancreatic alpha cell
10
7
13
12
pancreatic beta cell
10
7
10
12
pancreatic ductal cell
4
13
4
10
pancreatic acinar cell
4
8
5
12
+ See 66 more…
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