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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1284
total RNA-seq
750
ChIP-seq
435
ATAC-seq
361
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
4
MeRIP-seq
3
DNase-seq
3
snDrop-seq
1
DNAme array
Assay category
1663
Transcription
750
DNA binding
522
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
504
histone modification
503
histone
305
narrow histone mark
222
control
198
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
593
February, 2021
340
May, 2020
302
August, 2017
246
May, 2021
233
August, 2021
214
October, 2019
200
May, 2022
183
February, 2023
168
July, 2018
106
July, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
31
October, 2018
28
November, 2017
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
12
December, 2017
10
November, 2018
9
November, 2020
8
December, 2019
8
June, 2019
7
August, 2020
6
September, 2017
5
March, 2019
4
December, 2018
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
January, 2019
1
March, 2023
Available data
2516
bam
2385
bigWig
1346
tsv
1279
bed narrowPeak
786
fastq
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3190
Homo sapiens
Biosample type
2216
tissue
977
primary cell
377
in vitro differentiated cells
301
cell line
10
stem cell
Organ
767
pancreas
561
connective tissue
480
adipose tissue
358
epithelium
324
liver
232
heart
232
kidney
159
bone element
159
brain
85
vasculature
83
blood vessel
55
eye
50
artery
49
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
12
spleen
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2567
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1786
hg19
1735
GRCh38
Lab
2277
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
121
inconsistent ontology term
40
audit script error
Audit category:
67
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed broadPeak
bigBed narrowPeak
BIOSAMPLE
ASSAY
3193 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
DNase-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
298
71
68
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
+ See 159 more…
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
29
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
16
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 89 more…
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