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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
39
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
207
DNA binding
41
DNA accessibility
Target of assay
202
histone
202
histone modification
106
broad histone mark
96
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
127
May, 2021
46
September, 2018
23
June, 2019
19
August, 2017
19
October, 2019
5
September, 2017
4
May, 2019
3
August, 2021
1
February, 2021
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
248
Homo sapiens
Biosample type
808
tissue
351
cell line
248
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
86
epithelium
68
pancreas
12
kidney
11
blood vessel
11
connective tissue
11
vasculature
11
vein
8
musculature of body
4
liver
3
heart
2
eye
Project
164
AMP
84
T1D
Genome assembly (visualization)
248
hg19
216
GRCh38
Lab
134
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
248 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
pancreatic acinar cell
8
5
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