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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
2
ATAC-seq
2
DNase-seq
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
22
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
3
control
Date released
151
May, 2021
134
May, 2022
100
May, 2020
48
July, 2018
47
February, 2021
47
September, 2018
45
August, 2017
43
April, 2018
43
September, 2020
31
June, 2019
28
October, 2019
18
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
29
bam
21
bed narrowPeak
21
bigWig
13
bigBed narrowPeak
4
bed broadPeak
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
28
Homo sapiens
Biosample type
216
tissue
28
primary cell
25
cell line
6
in vitro differentiated cells
Organ
27
epithelium
17
blood vessel
17
vasculature
17
vein
9
kidney
1
liver
Project
28
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
15
1
1
epithelial cell of proximal tubule
7
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
kidney glomerular epithelial cell
1
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