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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
237
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
48
snATAC-seq
47
WGBS
15
pCHi-C
9
Hi-C
9
RRBS
3
DNase-seq
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
250
DNA accessibility
246
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
213
histone
213
histone modification
110
broad histone mark
103
narrow histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
46
July, 2018
45
August, 2017
45
February, 2021
41
April, 2018
30
October, 2019
23
July, 2019
19
June, 2019
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
998
Homo sapiens
Biosample type
2056
tissue
998
primary cell
542
cell line
297
in vitro differentiated cells
9
stem cell
Organ
384
epithelium
346
pancreas
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
478
AMP
324
HPAP
195
T1D
1
ITG
Genome assembly (visualization)
557
hg19
465
GRCh38
Lab
443
AMP-T2D consortium
324
Klaus Kaestner, Upenn
230
Kyle Gaulton, UCSD
1
ITG
Audit category:
39
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
organ_slims!
blood
connective tissue
BIOSAMPLE
ASSAY
998 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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