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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
595
ChIP-seq
208
ATAC-seq
4
FAIRE-seq
1
DNase-seq
Assay category
595
DNA binding
213
DNA accessibility
Target of assay
520
histone modification
519
histone
266
narrow histone mark
253
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
147
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
12
October, 2017
8
February, 2021
8
November, 2018
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
802
Homo sapiens
Biosample type
808
tissue
351
cell line
248
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
165
brain
146
heart
117
pancreas
110
liver
95
blood vessel
95
vasculature
85
kidney
58
artery
56
limb
27
eye
25
nerve
19
musculature of body
13
spleen
12
epithelium
11
adipose tissue
11
connective tissue
8
bone element
8
skeleton
1
pituitary gland
Project
806
AMP
2
T1D
Genome assembly (visualization)
707
GRCh38
617
hg19
Lab
666
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
808 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver
82
20
kidney
20
64
1
islet of Langerhans
20
37
1
1
left cardiac atrium
40
coronary artery
3
36
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