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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1020
total RNA-seq
698
ChIP-seq
256
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
DNase-seq
Assay category
1206
Transcription
698
DNA binding
289
DNA accessibility
37
DNA methylation
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
227
August, 2021
193
May, 2020
151
October, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
May, 2022
62
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
31
March, 2020
19
April, 2020
17
November, 2018
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1681
bam
1570
bigWig
1053
tsv
792
bed narrowPeak
445
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
157
txt
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
6
csv
4
bed bed3
Organism
2338
Homo sapiens
Biosample type
2347
tissue
1022
primary cell
599
cell line
389
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
495
pancreas
486
adipose tissue
357
liver
283
heart
brain
230
kidney
158
bone element
127
blood vessel
127
vasculature
82
limb
69
artery
53
eye
44
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2250
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1507
GRCh38
1458
hg19
Lab
1998
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
organ_slims!
brain
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
2347 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
71
67
7
4
1
4
1
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
1
kidney
49
27
75
64
6
1
1
bone element
84
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