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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
18
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
21
October, 2019
5
July, 2019
3
February, 2020
1
May, 2019
1
May, 2021
Available data
114
bam
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
31
Homo sapiens
Biosample type
30
tissue
1
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
371
epithelium
344
liver
202
heart
171
kidney
151
bone element
101
vasculature
99
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
1
T1D
Genome assembly (visualization)
5
GRCh38
4
hg19
Lab
30
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
bigBed broadPeak
bed narrowPeak
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
muscle of leg
1
1
islet of Langerhans
1
primary cell
megakaryocyte
1
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