Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
ATAC-seq
57
snATAC-seq
5
DNase-seq
3
FAIRE-seq
Assay category
1547
Transcription
972
DNA binding
535
DNA accessibility
76
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
105
February, 2023
100
May, 2020
82
August, 2021
81
May, 2022
34
May, 2021
26
November, 2019
26
October, 2019
22
February, 2021
16
January, 2021
11
May, 2023
10
April, 2020
8
July, 2019
4
March, 2020
3
January, 2018
3
March, 2019
2
August, 2017
1
August, 2022
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
bigBed broadPeak
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
534
Homo sapiens
Biosample type
262
tissue
201
primary cell
42
in vitro differentiated cells
30
cell line
Organ
107
pancreas
85
kidney
75
epithelium
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
23
connective tissue
23
liver
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
4
adipose tissue
4
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
vein
Project
436
AMP
60
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
218
hg19
193
GRCh38
Lab
322
AMP-T2D consortium
81
Katalin Susztak, Upenn
60
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
42
inconsistent ontology term
2
audit script error
1
inconsistent replicate
files.file_type!
bigBed broadPeak
fastq
BIOSAMPLE
ASSAY
535 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
48
7
coronary artery
36
liver
20
retina
15
+ See 27 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
Langerhans cell
21
monocyte
15
+ See 39 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
Download