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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
61
Homo sapiens
Biosample type
48
tissue
13
primary cell
Organ
938
pancreas
727
liver
673
connective tissue
502
epithelium
487
adipose tissue
360
heart
276
kidney
236
brain
216
vasculature
214
blood vessel
159
bone element
135
artery
83
limb
69
blood
69
bodily fluid
61
musculature of body
56
eye
40
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
40
hg19
20
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
ibed
month_released!
February, 2020
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
7
1
psoas muscle
2
2
1
gastrocnemius medialis
4
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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