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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
3
MeRIP-seq
Assay category
76
DNA binding
Target of assay
312
transcription factor
89
recombinant protein
79
control
61
RNA binding protein
26
chromatin remodeller
24
histone
24
histone modification
13
narrow histone mark
11
broad histone mark
3
nucleotide modification
1
other context
1
other post-translational modification
Date released
55
November, 2017
9
October, 2019
4
August, 2021
3
January, 2019
3
November, 2018
3
November, 2020
2
November, 2019
Available data
76
bam
62
fastq
13
bigWig
tagAlign
Organism
79
Homo sapiens
Biosample type
135
tissue
79
cell line
33
primary cell
27
in vitro differentiated cells
1
stem cell
Organ
59
liver
11
pancreas
6
blood
6
bodily fluid
5
epithelium
3
kidney
Project
79
AMP
Genome assembly (visualization)
12
hg19
Lab
72
AMP-T2D consortium
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
files.file_type!
bigBed broadPeak
tagAlign
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
59
GM12878
6
Panc1
6
EndoC_BH1
2
3
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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