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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
102
bam
85
bigWig
74
bed narrowPeak
58
tsv
25
bigBed narrowPeak
tagAlign
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
Organism
131
Homo sapiens
Biosample type
69
tissue
60
cell line
2
primary cell
Organ
920
pancreas
653
connective tissue
653
liver
495
epithelium
481
adipose tissue
357
heart
276
kidney
213
vasculature
211
blood vessel
159
bone element
131
artery
130
brain
86
limb
69
blood
69
bodily fluid
57
eye
48
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
131
AMP
Genome assembly (visualization)
120
GRCh38
85
hg19
Lab
131
AMP-T2D consortium
files.file_type!
bigBed broadPeak
tagAlign
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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