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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
407
ChIP-seq
104
total RNA-seq
10
ATAC-seq
1
DNase-seq
1
WGBS
Assay category
407
DNA binding
104
Transcription
11
DNA accessibility
1
DNA methylation
Target of assay
305
transcription factor
89
recombinant protein
76
control
60
RNA binding protein
26
chromatin remodeller
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
1
other context
1
other post-translational modification
Date released
256
November, 2017
95
February, 2021
61
November, 2018
28
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
523
Homo sapiens
Biosample type
1731
tissue
560
primary cell
523
cell line
290
in vitro differentiated cells
3
stem cell
Organ
308
liver
66
artery
66
blood vessel
66
heart
66
vasculature
62
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
519
AMP
4
T1D
Genome assembly (visualization)
450
hg19
418
GRCh38
Lab
523
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
523 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
301
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
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