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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
8
ATAC-seq
Assay category
58
DNA binding
8
DNA accessibility
Target of assay
35
histone
35
histone modification
23
transcription factor
18
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
45
August, 2017
9
June, 2019
5
October, 2018
2
August, 2021
1
February, 2021
1
February, 2023
1
November, 2019
1
November, 2020
1
October, 2017
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
66
Homo sapiens
Biosample type
44
in vitro differentiated cells
11
primary cell
11
tissue
Organ
384
liver
207
pancreas
165
brain
131
epithelium
121
heart
118
blood vessel
118
vasculature
105
kidney
70
artery
66
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
27
musculature of body
25
nerve
14
embryo
13
spleen
11
adipose tissue
11
vein
8
bone element
8
skeleton
1
pituitary gland
Project
66
AMP
Genome assembly (visualization)
66
hg19
62
GRCh38
Lab
64
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
6
inconsistent control read length
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
ATAC-seq
in vitro differentiated cells
adipocyte
42
1
osteoblast
1
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
osteoblast
2
tissue
omental fat pad
3
1
subcutaneous adipose tissue
2
1
adipose tissue
1
1
adipose tissue(adipose white tissue)
1
subcutaneous abdominal adipose tissue
1
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