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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
19
RRBS
17
WGBS
2
ATAC-seq
Assay category
36
DNA methylation
35
DNA binding
2
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
32
August, 2017
23
July, 2019
7
November, 2018
6
November, 2017
4
October, 2017
1
March, 2019
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
67
Homo sapiens
Biosample type
62
tissue
10
primary cell
1
cell line
Organ
20
pancreas
17
musculature of body
11
brain
8
heart
6
epithelium
4
connective tissue
4
kidney
3
adipose tissue
3
liver
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
73
AMP
Genome assembly (visualization)
55
hg19
32
GRCh38
Lab
71
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
73 results
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Clear Filters
ChIP-seq
RRBS
WGBS
ATAC-seq
tissue
skeletal muscle tissue
13
2
islet of Langerhans
6
1
2
pancreas
6
1
2
brain
3
1
heart left ventricle
1
2
+ See 16 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
1
See all biosamples
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