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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
121
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
174
DNA binding
123
Transcription
42
DNA accessibility
4
3D chromatin structure
Target of assay
96
histone
96
histone modification
49
transcription factor
48
broad histone mark
47
narrow histone mark
29
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
43
December, 2017
42
August, 2021
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
252
bam
228
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
bigBed broadPeak
Organism
354
Homo sapiens
Biosample type
2600
tissue
1039
primary cell
603
cell line
354
in vitro differentiated cells
10
stem cell
Organ
96
connective tissue
24
epithelium
16
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
354
AMP
Genome assembly (visualization)
265
hg19
233
GRCh38
4
hg18
Lab
300
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
files.file_type!
bigBed broadPeak
lab.title!
Maike Sander, UCSD
month_released!
February, 2018
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
8
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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