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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
total RNA-seq
34
ATAC-seq
17
pCHi-C
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
44
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
18
February, 2023
18
May, 2022
8
January, 2021
Available data
132
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
18
fastq
Organism
220
Homo sapiens
Biosample type
133
primary cell
42
in vitro differentiated cells
40
tissue
5
cell line
Organ
39
pancreas
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
127
T1D
93
AMP
Genome assembly (visualization)
140
hg19
84
GRCh38
Lab
2319
AMP-T2D consortium
232
Klaus Kaestner, Upenn
220
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed broadPeak
assay_title!
total RNA-seq
organ_slims!
blood
BIOSAMPLE
ASSAY
220 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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