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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
73
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
430
bam
413
bigWig
389
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
bigBed broadPeak
1
bedpe bed3+
Organism
476
Homo sapiens
Biosample type
476
tissue
1
in vitro differentiated cells
Organ
933
pancreas
718
liver
657
connective tissue
489
epithelium
477
adipose tissue
298
heart
265
kidney
230
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
53
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
477
AMP
Genome assembly (visualization)
412
hg19
410
GRCh38
Lab
477
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed broadPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
477 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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