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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
29
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
29
DNA binding
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
66
February, 2021
35
February, 2023
24
October, 2019
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
97
bam
82
bigWig
71
bed narrowPeak
58
tsv
22
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
Organism
132
Homo sapiens
Biosample type
66
cell line
64
tissue
2
primary cell
Organ
937
pancreas
728
liver
675
connective tissue
497
epithelium
489
adipose tissue
302
heart
271
kidney
220
brain
169
vasculature
167
blood vessel
159
bone element
132
artery
79
limb
69
blood
69
bodily fluid
57
eye
56
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
121
GRCh38
86
hg19
Lab
132
AMP-T2D consortium
files.file_type!
bigBed broadPeak
month_released!
May, 2019
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
tibial artery
1
1
23
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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