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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
2
ATAC-seq
Assay category
29
DNA binding
2
DNA accessibility
Target of assay
29
histone
29
histone modification
18
broad histone mark
11
narrow histone mark
Date released
26
August, 2017
November, 2017
4
October, 2017
1
March, 2019
Available data
3000
bam
2835
bigWig
1600
tsv
1504
bed narrowPeak
1034
fastq
730
bigBed narrowPeak
320
tagAlign
273
bed bed3+
252
bed broadPeak
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
25
Homo sapiens
Biosample type
31
tissue
Organ
14
pancreas
13
musculature of body
3
brain
1
adipose tissue
1
connective tissue
Project
31
AMP
Genome assembly (visualization)
30
hg19
10
GRCh38
Lab
29
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
November, 2017
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
subcutaneous abdominal adipose tissue
1
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