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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
26
ATAC-seq
20
total RNA-seq
2
Hi-C
1
FAIRE-seq
Assay category
72
DNA binding
27
DNA accessibility
20
Transcription
2
3D chromatin structure
Target of assay
62
transcription factor
22
RNA binding protein
13
recombinant protein
10
histone
10
histone modification
7
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
574
February, 2021
316
May, 2021
261
August, 2017
260
May, 2020
217
November, 2017
208
October, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
65
April, 2019
62
November, 2018
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
23
June, 2019
13
October, 2017
7
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
128
bam
108
bed narrowPeak
102
bigWig
71
bigBed narrowPeak
71
fastq
20
tsv
9
bed bed3+
9
bed broadPeak
bigBed broadPeak
2
bedpe bed3+
2
hic
Organism
121
Homo sapiens
Biosample type
68
cell line
48
tissue
5
in vitro differentiated cells
Organ
54
pancreas
46
liver
14
epithelium
12
blood
12
bodily fluid
3
spleen
1
adipose tissue
1
connective tissue
Project
121
AMP
Genome assembly (visualization)
127
GRCh38
121
hg19
Lab
121
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
cell line
HepG2
42
EndoC_BH1
11
1
1
1
GM12878
12
tissue
islet of Langerhans
19
19
1
liver
4
spleen
3
adipose tissue(adipose white tissue)
1
pancreas
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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