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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
FAIRE-seq
Assay category
93
DNA binding
26
Transcription
15
DNA accessibility
Target of assay
61
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
15
narrow histone mark
13
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
574
February, 2021
316
May, 2021
261
August, 2017
260
May, 2020
217
November, 2017
208
October, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
65
April, 2019
62
November, 2018
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
23
June, 2019
13
October, 2017
7
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
143
bam
143
bigWig
143
fastq
117
bed narrowPeak
85
bigBed narrowPeak
26
tsv
9
bed bed3+
9
bed broadPeak
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
72
primary cell
54
cell line
8
tissue
Organ
73
pancreas
61
epithelium
46
liver
12
blood
12
bodily fluid
3
spleen
Project
134
AMP
Genome assembly (visualization)
142
GRCh38
134
hg19
Lab
134
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
cell line
HepG2
42
GM12878
12
tissue
liver
4
spleen
3
pancreas
1
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