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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
Assay category
235
DNA binding
183
Transcription
35
DNA accessibility
8
DNA methylation
Target of assay
140
histone
140
histone modification
80
transcription factor
76
broad histone mark
64
narrow histone mark
26
RNA binding protein
16
recombinant protein
15
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
342
November, 2017
283
August, 2017
240
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
186
bigWig
183
bed narrowPeak
161
bam
90
tagAlign
70
fastq
63
bigBed narrowPeak
Organism
235
Homo sapiens
Biosample type
121
primary cell
61
cell line
43
in vitro differentiated cells
10
tissue
Organ
49
liver
15
blood
15
bodily fluid
6
spleen
4
epithelium
4
pancreas
Project
150
AMP
85
T1D
Genome assembly (visualization)
184
hg19
153
GRCh38
Lab
154
Kyle Gaulton, UCSD
81
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
235 results
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Clear Filters
ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
1
cell line
HepG2
45
GM12878
15
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
37
cardiomyocytes
3
pancreatic PP cell
3
tissue
spleen
6
liver
4
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