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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
Assay category
342
DNA binding
4
Transcription
1
DNA accessibility
Target of assay
197
transcription factor
76
control
71
histone
71
histone modification
66
recombinant protein
42
broad histone mark
30
RNA binding protein
29
narrow histone mark
11
chromatin remodeller
5
nucleotide modification
1
other context
1
other post-translational modification
Date released
715
February, 2021
399
May, 2021
396
August, 2017
342
November, 2017
341
May, 2020
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
398
bam
339
bigWig
324
fastq
315
bed narrowPeak
313
bigBed narrowPeak
78
tagAlign
71
bed broadPeak
bigBed broadPeak
4
tsv
3
tar
1
bed bed3+
Organism
357
Homo sapiens
Biosample type
263
cell line
86
tissue
8
primary cell
Organ
257
liver
85
brain
10
pancreas
8
epithelium
5
connective tissue
2
vasculature
1
blood vessel
Project
357
AMP
Genome assembly (visualization)
235
GRCh38
222
hg19
Lab
347
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
357 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
cell line
HepG2
257
EndoC_BH1
6
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
osteoblast
4
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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