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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
16
DNA binding
9
Transcription
5
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
3
control
Date released
May, 2019
17
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
1
February, 2020
1
November, 2017
Available data
33
bam
29
bigWig
19
bed narrowPeak
18
bigBed narrowPeak
10
tsv
9
bed broadPeak
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
35
Homo sapiens
Biosample type
21
primary cell
14
tissue
Organ
937
pancreas
728
liver
675
connective tissue
497
epithelium
489
adipose tissue
342
heart
271
kidney
220
brain
169
vasculature
167
blood vessel
159
bone element
artery
79
limb
69
blood
69
bodily fluid
57
eye
56
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
22
hg19
16
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed broadPeak
organ_slims!
artery
month_released!
May, 2019
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
tissue
aorta
1
1
4
2
1
thoracic aorta
2
1
ascending aorta
2
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