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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
23
transcription factor
20
histone
20
histone modification
12
chromatin remodeller
narrow histone mark
9
broad histone mark
4
RNA binding protein
1
recombinant protein
Date released
9
August, 2017
9
December, 2017
8
November, 2017
5
November, 2018
1
February, 2018
Available data
40
bam
40
bigWig
40
fastq
39
bed narrowPeak
23
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
bigBed broadPeak
6
tagAlign
Organism
32
Homo sapiens
Biosample type
15
in vitro differentiated cells
13
cell line
3
tissue
1
stem cell
Organ
13
liver
6
connective tissue
3
pancreas
2
embryo
Project
32
AMP
Genome assembly (visualization)
32
hg19
30
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
files.file_type!
bigBed broadPeak
organ_slims!
gonad
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
3
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
cell line
HepG2
13
tissue
pancreas
3
stem cell
hESC
1
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