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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1700
ChIP-seq
1473
total RNA-seq
456
ATAC-seq
299
single cell RNA-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
3
August, 2017
Available data
130
bam
130
bed narrowPeak
130
bigBed narrowPeak
130
bigWig
128
bed broadPeak
bigBed broadPeak
126
bed bed3+
12
fastq
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Organ
3
epithelium
kidney
1
liver
1
pancreas
Project
3
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
3
AMP-T2D consortium
files.file_type!
bigBed broadPeak
organ_slims!
kidney
BIOSAMPLE
ASSAY
3 results
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DNase-seq
tissue
islet of Langerhans
1
right lobe of liver
1
primary cell
skeletal muscle myoblast
1
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