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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
853
ChIP-seq
185
ATAC-seq
116
single cell RNA-seq
85
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
2
DNase-seq
Assay category
1112
Transcription
853
DNA binding
212
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
234
October, 2019
193
May, 2020
120
July, 2018
111
May, 2019
101
August, 2021
95
February, 2023
82
November, 2017
73
July, 2019
66
May, 2022
63
October, 2018
54
April, 2019
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1787
bam
1654
bigWig
1064
tsv
805
bed narrowPeak
454
bigBed narrowPeak
362
fastq
238
tagAlign
145
bed broadPeak
135
bed bed3+
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2334
Homo sapiens
Biosample type
2343
tissue
1010
primary cell
523
cell line
382
in vitro differentiated cells
10
stem cell
Organ
540
connective tissue
491
pancreas
481
adipose tissue
356
liver
276
heart
238
brain
kidney
158
bone element
125
blood vessel
125
vasculature
86
limb
68
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2293
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1559
GRCh38
1548
hg19
Lab
2185
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
organ_slims!
kidney
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2343 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
292
69
68
6
4
7
3
1
4
1
1
adipose tissue
382
2
3
3
1
liver
167
144
20
1
3
1
1
1
1
bone element
84
heart left ventricle
3
32
2
18
4
1
1
1
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