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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
3
3D chromatin structure
3
DNA binding
3
Transcription
1
DNA methylation
Target of assay
6
control
Date released
7
July, 2019
3
November, 2017
Available data
20
bigWig
17
bam
11
bed broadPeak
11
bed narrowPeak
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
10
Homo sapiens
Biosample type
tissue
10
primary cell
Organ
487
epithelium
440
pancreas
370
liver
130
connective tissue
91
vasculature
89
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
37
embryo
18
vein
13
musculature of body
10
brain
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
10
AMP
Genome assembly (visualization)
10
hg19
3
GRCh38
Lab
10
AMP-T2D consortium
files.file_type!
bigBed broadPeak
organ_slims!
spinal cord
biosample_type!
tissue
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
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