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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
2
ATAC-seq
Assay category
20
DNA binding
2
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
narrow histone mark
Date released
16
August, 2017
3
October, 2017
2
November, 2017
1
March, 2019
Available data
2987
bam
2729
bigWig
1599
tsv
1388
bed narrowPeak
1248
fastq
893
bigBed narrowPeak
293
bed broadPeak
bigBed broadPeak
260
bed bed3+
224
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
18
Homo sapiens
Biosample type
22
tissue
Organ
10
pancreas
8
musculature of body
4
brain
Project
22
AMP
Genome assembly (visualization)
21
hg19
9
GRCh38
Lab
20
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
organ_slims!
spinal cord
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
8
islet of Langerhans
4
2
pancreas
4
brain
2
cingulate gyrus
1
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