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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
61
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
61
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
423
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
bigBed broadPeak
1
bedpe bed3+
Organism
476
Homo sapiens
Biosample type
474
tissue
2
primary cell
1
in vitro differentiated cells
Organ
866
pancreas
674
liver
642
connective tissue
477
adipose tissue
455
epithelium
323
heart
261
kidney
195
vasculature
193
blood vessel
159
bone element
134
brain
131
artery
71
limb
68
blood
68
bodily fluid
54
eye
50
musculature of body
33
nerve
29
embryo
22
spleen
20
lung
16
skeleton
12
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
477
AMP
Genome assembly (visualization)
422
hg19
421
GRCh38
Lab
477
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed broadPeak
organ_slims!
spinal cord
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
477 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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