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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
8
snATAC-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
75
DNA binding
10
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
14
histone
14
histone modification
10
RNA binding protein
10
chromatin remodeller
8
control
7
broad histone mark
7
narrow histone mark
Date released
27
December, 2018
18
January, 2019
17
October, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
80
bam
70
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
60
fastq
4
bed broadPeak
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
87
Homo sapiens
Biosample type
61
cell line
26
primary cell
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
323
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
8
T1D
Genome assembly (visualization)
68
hg19
64
GRCh38
Lab
79
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
15
2
1
peripheral blood mononuclear cell
8
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