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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
212
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
31
control
Date released
86
October, 2019
85
November, 2017
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
246
Homo sapiens
Biosample type
237
tissue
9
primary cell
Organ
886
pancreas
721
liver
668
connective tissue
483
adipose tissue
449
epithelium
313
heart
272
kidney
246
brain
216
vasculature
215
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
57
musculature of body
56
eye
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
246
AMP
Genome assembly (visualization)
179
GRCh38
134
hg19
Lab
246
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed broadPeak
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
+ See 1 more…
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