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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
ATAC-seq
19
total RNA-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
79
DNA binding
24
Transcription
19
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
67
August, 2017
13
February, 2023
12
June, 2019
11
February, 2021
8
July, 2019
5
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
95
bam
89
bigWig
62
bed narrowPeak
58
fastq
21
bed bed3+
21
tsv
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
130
Homo sapiens
Biosample type
tissue
96
in vitro differentiated cells
33
primary cell
1
stem cell
Organ
487
epithelium
440
pancreas
370
liver
130
connective tissue
91
vasculature
89
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
37
embryo
18
vein
13
musculature of body
10
brain
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
129
AMP
1
T1D
Genome assembly (visualization)
101
hg19
79
GRCh38
Lab
125
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bigBed broadPeak
biosample_type!
tissue
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
67
8
5
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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primary cell
osteoblast
2
5
1
mesenchymal stem cell
7
cardiac fibroblast
5
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
+ See 6 more…
stem cell
mesenchymal stem cell
1
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