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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
189
total RNA-seq
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
193
Transcription
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
50
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
678
bam
601
bigWig
464
fastq
418
bed narrowPeak
357
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
705
Homo sapiens
Biosample type
342
cell line
337
tissue
15
in vitro differentiated cells
11
primary cell
Organ
787
pancreas
705
liver
650
connective tissue
483
adipose tissue
399
epithelium
276
heart
244
brain
201
kidney
173
vasculature
171
blood vessel
147
bone element
92
artery
78
limb
68
blood
68
bodily fluid
62
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
20
lung
18
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
705
AMP
Genome assembly (visualization)
539
hg19
479
GRCh38
Lab
654
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
705 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
320
14
1
2
2
2
1
tissue
liver
145
167
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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