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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
475
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
475
DNA binding
193
Transcription
24
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
chromatin remodeller
1
other context
1
other post-translational modification
Date released
246
November, 2017
194
May, 2020
60
December, 2017
54
August, 2017
45
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
658
bam
599
bigWig
442
fastq
418
bed narrowPeak
335
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
709
Homo sapiens
Biosample type
356
tissue
327
cell line
14
in vitro differentiated cells
12
primary cell
Organ
939
pancreas
709
liver
673
connective tissue
501
epithelium
489
adipose tissue
323
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
63
musculature of body
59
blood
59
bodily fluid
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
709
AMP
Genome assembly (visualization)
543
hg19
465
GRCh38
Lab
638
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed broadPeak
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
709 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
143
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
304
14
1
1
2
2
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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