Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
9
Transcription
6
3D chromatin structure
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
22
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
67
bigWig
60
bed narrowPeak
56
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
9
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
57
Homo sapiens
Biosample type
45
tissue
12
primary cell
Organ
886
pancreas
721
liver
668
connective tissue
483
adipose tissue
449
epithelium
313
heart
272
kidney
246
brain
216
vasculature
215
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
57
musculature of body
56
eye
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
37
hg19
19
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
57 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
Download