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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
31
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
50
tissue
5
primary cell
Organ
858
pancreas
727
liver
657
connective tissue
488
adipose tissue
412
epithelium
318
heart
254
kidney
245
brain
219
vasculature
217
blood vessel
137
artery
86
limb
75
bone element
69
blood
69
bodily fluid
57
eye
55
musculature of body
41
nerve
31
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
55
AMP
Genome assembly (visualization)
33
hg19
13
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
2
1
skeletal muscle satellite cell
1
1
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