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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
24
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
9
tsv
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
59
Homo sapiens
Biosample type
47
tissue
12
primary cell
Organ
933
pancreas
725
liver
672
connective tissue
496
epithelium
487
adipose tissue
315
heart
272
kidney
246
brain
217
vasculature
216
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
59
musculature of body
56
eye
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
37
hg19
19
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
bed bedMethyl
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
muscle of leg
7
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
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