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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
7
total RNA-seq
6
Hi-C
6
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
10
Transcription
7
DNA methylation
6
3D chromatin structure
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
12
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
69
bigWig
60
bed narrowPeak
58
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
10
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
65
Homo sapiens
Biosample type
51
tissue
14
primary cell
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
323
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
42
hg19
21
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
left ventricle myocardium
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
pericardium fibroblast
1
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