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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
28
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
184
histone
histone modification
114
narrow histone mark
70
broad histone mark
31
control
Date released
18
July, 2019
15
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
64
Homo sapiens
Biosample type
54
tissue
10
primary cell
Organ
788
pancreas
639
liver
597
connective tissue
457
adipose tissue
413
epithelium
261
heart
246
kidney
159
bone element
152
vasculature
150
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
30
musculature of body
25
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
22
hg19
14
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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